JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0005.2 AG Arabidopsis thaliana MADS MIKC
MA0006.1 Ahr::Arnt Mus musculus Basic::Basic PAS::PAS
MA0007.1 Ar Rattus rattus Nuclear Steroid
MA0007.2 AR Homo sapiens Nuclear Steroid
MA0007.3 Ar Mus musculus Nuclear Steroid
MA0008.1 HAT5 Arabidopsis thaliana Homeo HD-ZIP
MA0008.2 HAT5 Arabidopsis thaliana Homeo HD-ZIP
MA0008.3 HAT5 Arabidopsis thaliana Homeo HD-ZIP
MA0009.1 Tbxt Mus musculus T-Box Brachyury-related
MA0009.2 TBXT Homo sapiens T-Box Brachyury-related
Showing 10 profiles of page 2 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.