matrix-clustering JASPAR_2022_vertebrates

matrix-clustering  -v 2 -matrix JASPAR_2022_vertebrates_UNVALIDATED data/motifs/vertebrates/JASPAR_2022_UNVALIDATED_vertebrates.tf tf -hclust_method average -calc sum -title 'JASPAR 2022 vertebrates UNVALIDATED' -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -label_in_tree name -return json -quick -radial_tree_only -o results/JASPAR_2022_matrix_clustering/vertebrates/UNVALIDATED/radial_trees/JASPAR_2022_matrix_clustering_vertebrates_UNVALIDATED -ID_link_color_table data/annotation_tables/vertebrates/UNVALIDATED/JASPAR_2022_vertebrates_UNVALIDATED_annotations_with_colours.tsv

Results Summary

Nb Input motifs

Nb Input collections

Nb Clusters Found

Download
Root motifs

Complete results [zip]

Parameters used

Linkage method

Similarity metric

Thresholds to partition the tree

1167

Download

Download

average

Ncor

Ncor = 0.4
cor = 0.6

RSAT - matrix-clustering result

Analysis: JASPAR_2022_vertebrates_UNVALIDATED (07/10/2021 07:34)

Command

Results Summary

Radial Tree